Package: APAlyzer
Type: Package
Title: A toolkit for APA analysis using RNA-seq data
Version: 1.18.0
Description: Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.
Authors@R: c(person("Ruijia", "Wang", role=c("cre", "aut"),
                email="rjwang.bioinfo@gmail.com", 
                comment = c(ORCID = "0000-0002-4211-5207")), 
				person("Bin", "Tian", role="aut"),
				person("Wei-Chun", "Chen", role="aut"))
biocViews: Sequencing, RNASeq, DifferentialExpression, GeneExpression,
        GeneRegulation, Annotation, DataImport, Software
Imports: GenomicRanges, GenomicFeatures, GenomicAlignments, DESeq2,
        ggrepel, SummarizedExperiment, Rsubread, stats, ggplot2,
        methods, rtracklayer, VariantAnnotation, dplyr, tidyr, repmis,
        Rsamtools, HybridMTest
Suggests: knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi,
        TBX20BamSubset, testthat, pasillaBamSubset
URL: https://github.com/RJWANGbioinfo/APAlyzer/
BugReports: https://github.com/RJWANGbioinfo/APAlyzer/issues
VignetteBuilder: knitr
License: LGPL-3
Encoding: UTF-8
Depends: R (>= 3.5.0)
git_url: https://git.bioconductor.org/packages/APAlyzer
git_branch: RELEASE_3_19
git_last_commit: 2f81d23
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-01 21:07:37 UTC; biocbuild
Author: Ruijia Wang [cre, aut] (<https://orcid.org/0000-0002-4211-5207>),
  Bin Tian [aut],
  Wei-Chun Chen [aut]
Maintainer: Ruijia Wang <rjwang.bioinfo@gmail.com>
Built: R 4.4.0; ; 2024-05-02 12:25:47 UTC; windows
