# Adaptive Signature Selection and InteGratioN (ASSIGN)

## Documentation for package ‘ASSIGN’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

assign.convergence | Check the convergence of the MCMC chain
assign.cv.output | Cross validation output
assign.mcmc | The Gibbs sampling algorithm to approximate the joint distribution of the model parameters
assign.output | Prediction/validation output for test data
assign.preprocess | Input data preprocessing
assign.summary | Summary of the model parameters estimated by the Gibbs sampling algorithm
assign.wrapper | ASSIGN All-in-one function
ComBat.step2 | Perform the second step of ComBat
excludegenes | Exclude Gene List
gather_assign_results | Gather the ASSIGN results in a specific directory
geneList1 | Pathway signature gene sets
gfrn_geneList | Pathway Signature Gene Lists
merge_drop | Combine two data frames
optimizeGFRN | Optimize GFRN gene lists lengths
pcaplot | Display a PCA Plot of the Data
runassignGFRN | Run optimized single pathway ASSIGN
testData1 | Gene expression profiling from cancer patients (test dataset)
trainingData1 | Gene expression profiling from cell line perturbation experiments (training dataset)