Package: CNAnorm
Version: 1.50.0
Date: 2012-08-06
Title: A normalization method for Copy Number Aberration in cancer
        samples
Author: Stefano Berri <sberri@illumina.com>, Henry M. Wood
        <H.M.Wood@leeds.ac.uk>, Arief Gusnanto <a.gusnanto@leeds.ac.uk>
Maintainer: Stefano Berri <sberri@illumina.com>
Depends: R (>= 2.10.1), methods
Description: Performs ratio, GC content correction and normalization of
        data obtained using low coverage (one read every 100-10,000 bp)
        high troughput sequencing. It performs a "discrete"
        normalization looking for the ploidy of the genome. It will
        also provide tumour content if at least two ploidy states can
        be found.
License: GPL-2
Imports: DNAcopy
Collate: AllGenerics.R AllClasses.R dataFrame2object.R
        workflowWrapper.R initialize-methods.R summary-methods.R
        smoothseg.R bandsegment.R mixtureModel.R normalize.R
        length-methods.R CNAnorm-accessors.R CNAnorm-methods.R
        Data-methods.R makeDefaultGraphParamteres.R
URL: http://www.r-project.org,
LazyLoad: yes
Packaged: 2024-05-01 21:51:45 UTC; biocbuild
biocViews: CopyNumberVariation, Sequencing, Coverage, Normalization,
        WholeGenome, DNASeq, GenomicVariation
git_url: https://git.bioconductor.org/packages/CNAnorm
git_branch: RELEASE_3_19
git_last_commit: a0fa3b7
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: yes
Built: R 4.4.0; x86_64-w64-mingw32; 2024-05-02 12:37:03 UTC; windows
Archs: x64
