# Summarization and expression/phenotype association of CNV ranges

## Documentation for package ‘CNVRanger’ version 1.20.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cnvEQTL | CNV-expression association analysis
cnvGWAS | Run the CNV-GWAS
cnvOncoPrint | OncoPrint plot for CNV regions
generateGDS | Produce CNV-GDS for the phenotyped samples
importLrrBaf | Import LRR and BAF from text files used in the CNV analysis
plotEQTL | Plot EQTL region
plotManhattan | Manhattan Plot
plotRecurrentRegions | Plot recurrent CNV regions
populationRanges | Summarizing CNV ranges across a population
setupCnvGWAS | Setup the folders and files to run CNV-GWAS analysis