# Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

## Documentation for package ‘CRISPRball’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

build_depmap_db | Build SQLite database of DepMap data
CRISPRball | Create an interactive Shiny app for visualization & exploration of CRISPR analyses
depmap_22q1_cn | DepMap copy number data
depmap_22q1_crispr | DepMap CRISPR screen data
depmap_22q1_crispr_rnai | DepMap CRISPR & RNAi screen data
depmap_22q1_rnai | DepMap RNAi screen data
depmap_22q1_TPM | DepMap expression data
gene_ingress | Parse gene summary data for easier plotting and display
get_depmap_essentiality | Get essential/selective gene information from DepMap summary table.
get_depmap_plot_data | Create DepMap dataframe for plotting
plot_bar | Create interactive bar plot
plot_correlation_heatmap | Plot a Correlation Heatmap
plot_depmap_cn | Plot gene copy number information from DepMap
plot_depmap_dependency | Plot gene dependency information from DepMap CRISPR and RNAi tables
plot_depmap_expression | Plot gene expression information from DepMap, mostly from CCLE
plot_depmap_lineages | Plot selected information across lineages from DepMap.
plot_hist | Create a plotly plot from a distribution of values
plot_lawn | Create an interactive lawn plot
plot_pca_biplot | Plot a biplot from a PCAtools 'pca' object
plot_rank | Create an interactive rank plot
plot_volcano | Create an interactive volcano plot
read_mle_gene_summary | Read and parse MAGeCK MLE output gene summary file