Package: ChIPQC
Type: Package
Title: Quality metrics for ChIPseq data
Version: 1.40.0
Author: Tom Carroll, Wei Liu, Ines de Santiago, Rory Stark
Maintainer: Tom Carroll <tc.infomatics@gmail.com>, Rory Stark <bioconductor@starkhome.com>
Description: Quality metrics for ChIPseq data.
biocViews: Sequencing, ChIPSeq, QualityControl, ReportWriting
License: GPL (>= 3)
LazyLoad: yes
Depends: R (>= 3.5.0), ggplot2, DiffBind, GenomicRanges (>= 1.17.19),
        BiocParallel
Imports: BiocGenerics (>= 0.11.3), S4Vectors (>= 0.1.0), IRanges (>=
        1.99.17), Rsamtools (>= 1.17.28), GenomicAlignments (>=
        1.1.16), chipseq (>= 1.12.0), gtools, methods, reshape2,
        Nozzle.R1, Biobase, grDevices, stats, utils, GenomicFeatures,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Hsapiens.UCSC.hg18.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene,
        TxDb.Mmusculus.UCSC.mm9.knownGene,
        TxDb.Rnorvegicus.UCSC.rn4.ensGene,
        TxDb.Celegans.UCSC.ce6.ensGene,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene
Suggests: BiocStyle
Collate: ChIPQCsample-class.R ChIPQCexperiment-class.R sampleQC.R
        ChIPQC_IF.R plots.r dbaplots.R utilities.R report.r
git_url: https://git.bioconductor.org/packages/ChIPQC
git_branch: RELEASE_3_19
git_last_commit: b105a43
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-01 21:45:22 UTC; biocbuild
Built: R 4.4.0; ; 2024-05-02 12:35:04 UTC; windows
