Package: ClustIRR
Type: Package
Title: Clustering of immune receptor repertoires
Version: 1.2.0
Authors@R: c(
    person("Simo", "Kitanovski", email = "simokitanovski@gmail.com", 
    role = c("aut", "cre"), comment=c(ORCID="0000-0003-2909-5376")),
    person("Kai", "Wollek", email = "kai.wollek@uni-duisburg-essen.de", 
    role = c("aut"), comment=c(ORCID="0009-0008-5941-9160")))
Description: ClustIRR is a quantitative method for clustering of immune  
    receptor repertoires (IRRs). The algorithm identifies groups of T or B 
    cell receptors (TCRs or BCRs) with possibly similar specificity directly
    from the sequences of their complementarity determining regions. ClustIRR 
    uses graphs to visualize the specificity structures of IRRs.
License: GPL-3 + file LICENSE
LazyData: false
Depends: R (>= 4.3.0)
Imports: stringdist, methods, stats, utils, igraph, visNetwork,
        blaster, pwalign, grDevices, parallel
Suggests: BiocStyle, knitr, testthat, ggplot2, patchwork, ggrepel
Encoding: UTF-8
NeedsCompilation: no
biocViews: Clustering, ImmunoOncology, SingleCell, Software,
        Classification
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://github.com/snaketron/ClustIRR
BugReports: https://github.com/snaketron/ClustIRR/issues
git_url: https://git.bioconductor.org/packages/ClustIRR
git_branch: RELEASE_3_19
git_last_commit: ea30ea3
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
Packaged: 2024-05-01 21:51:03 UTC; biocbuild
Author: Simo Kitanovski [aut, cre] (<https://orcid.org/0000-0003-2909-5376>),
  Kai Wollek [aut] (<https://orcid.org/0009-0008-5941-9160>)
Maintainer: Simo Kitanovski <simokitanovski@gmail.com>
Built: R 4.4.0; ; 2024-05-02 12:36:48 UTC; windows
