Package: GOTHiC
Title: Binomial test for Hi-C data analysis
Description: This is a Hi-C analysis package using a cumulative
        binomial test to detect interactions between distal genomic
        loci that have significantly more reads than expected by chance
        in Hi-C experiments. It takes mapped paired NGS reads as input
        and gives back the list of significant interactions for a given
        bin size in the genome.
Version: 1.40.0
Date: 2021-11-18
Author: Borbala Mifsud and Robert Sugar
Maintainer: Borbala Mifsud <b.mifsud@qmul.ac.uk>
Depends: R (>= 3.5.0), methods, GenomicRanges, Biostrings, BSgenome,
        data.table
Imports: BiocGenerics, S4Vectors (>= 0.9.38), IRanges, Rsamtools,
        ShortRead, rtracklayer, ggplot2, BiocManager, grDevices, utils,
        stats, GenomeInfoDb
Suggests: HiCDataLymphoblast
Enhances: parallel
License: GPL-3
biocViews: ImmunoOncology, Sequencing, Preprocessing, Epigenetics, HiC
git_url: https://git.bioconductor.org/packages/GOTHiC
git_branch: RELEASE_3_19
git_last_commit: 6818add
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-01 23:16:38 UTC; biocbuild
Built: R 4.4.0; ; 2024-05-02 12:54:58 UTC; windows
