# Distributed computing by file or by range

## Documentation for package ‘GenomicFiles’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

assay-method | VcfStack and RangedVcfStack Objects
class:GenomicFiles | GenomicFiles objects
class:VcfStack | VcfStack and RangedVcfStack Objects
colData-method | VcfStack and RangedVcfStack Objects
colData<--method | GenomicFiles objects
colData<--method | VcfStack and RangedVcfStack Objects
colnames-method | VcfStack and RangedVcfStack Objects
dim-method | VcfStack and RangedVcfStack Objects
dimnames-method | VcfStack and RangedVcfStack Objects
dimnames<--method | GenomicFiles objects
files | GenomicFiles objects
files-method | GenomicFiles objects
files-method | VcfStack and RangedVcfStack Objects
files<- | GenomicFiles objects
files<--method | GenomicFiles objects
files<--method | VcfStack and RangedVcfStack Objects
findTypeRegistry | Functions for creating and searching a registry of file types.
GenomicFiles | GenomicFiles objects
GenomicFiles-class | GenomicFiles objects
GenomicFiles-deprecated | Deprecated functions in package 'GenomicFiles'
GenomicFiles-method | GenomicFiles objects
getVCFPath | Deprecated functions in package 'GenomicFiles'
isPacked | Range transformations of a 'GenomicRanges' object for optimal file queries.
makeFileType | Functions for creating and searching a registry of file types.
pack | Range transformations of a 'GenomicRanges' object for optimal file queries.
pack-method | Range transformations of a 'GenomicRanges' object for optimal file queries.
paths1kg | VcfStack and RangedVcfStack Objects
RangedVcfStack | VcfStack and RangedVcfStack Objects
RangedVcfStack-class | VcfStack and RangedVcfStack Objects
readVcfStack | VcfStack and RangedVcfStack Objects
reduceByFile | Parallel computations by files
reduceByFile-method | Parallel computations by files
reduceByRange | Parallel computations by ranges
reduceByRange-method | Parallel computations by ranges
reduceByYield | Iterate through a BAM (or other) file, reducing output to a single result.
reduceFiles | Parallel computations by files
reduceRanges | Parallel computations by ranges
REDUCEsampler | Iterate through a BAM (or other) file, reducing output to a single result.
registerFileType | Functions for creating and searching a registry of file types.
registry-utils | Functions for creating and searching a registry of file types.
rownames-method | VcfStack and RangedVcfStack Objects
rowRanges-method | VcfStack and RangedVcfStack Objects
rowRanges<--method | VcfStack and RangedVcfStack Objects
seqinfo-method | VcfStack and RangedVcfStack Objects
seqinfo<--method | VcfStack and RangedVcfStack Objects
seqlevelsStyle<--method | VcfStack and RangedVcfStack Objects
show-method | GenomicFiles objects
show-method | VcfStack and RangedVcfStack Objects
unpack | Un-pack results obtained with a pack()ed group of ranges
unpack-method | Un-pack results obtained with a pack()ed group of ranges
vcfFields-method | VcfStack and RangedVcfStack Objects
VcfStack | VcfStack and RangedVcfStack Objects
VcfStack-class | VcfStack and RangedVcfStack Objects
[-method | GenomicFiles objects
[-method | VcfStack and RangedVcfStack Objects