Package: Gviz
Title: Plotting data and annotation information along genomic
        coordinates
Version: 1.48.0
Authors@R: c(person("Florian", "Hahne", role="aut"),
	 person("Steffen", "Durinck", role="aut"),
	 person("Robert", "Ivanek", role=c("aut", "cre"), 
	        email="robert.ivanek@unibas.ch", 
	        comment=c(ORCID="0000-0002-8403-056X")),
	 person("Arne", "Mueller", role="aut"),
	 person("Steve", "Lianoglou", role="aut"),
	 person("Ge", "Tan", role="aut"),
	 person("Lance", "Parsons", role="aut"),
	 person("Shraddha", "Pai", role="aut"),
	 person("Thomas", "McCarthy", role="ctb"),
	 person("Felix", "Ernst", role="ctb"),
	 person("Mike", "Smith", role="ctb"))
Description: Genomic data analyses requires integrated visualization 
    of known genomic information and new experimental data. Gviz uses
    the biomaRt and the rtracklayer packages to perform live
    annotation queries to Ensembl and UCSC and translates this to
    e.g. gene/transcript structures in viewports of the grid graphics
    package. This results in genomic information plotted together with
    your data.
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.2.3.9001
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.3), methods, S4Vectors (>= 0.9.25), IRanges (>=
        1.99.18), GenomicRanges (>= 1.17.20), grid
Imports: XVector (>= 0.5.7), rtracklayer (>= 1.25.13), lattice,
        RColorBrewer, biomaRt (>= 2.11.0), AnnotationDbi (>= 1.27.5),
        Biobase (>= 2.15.3), GenomicFeatures (>= 1.17.22), ensembldb
        (>= 2.11.3), BSgenome (>= 1.33.1), Biostrings (>= 2.33.11),
        biovizBase (>= 1.13.8), Rsamtools (>= 1.17.28), latticeExtra
        (>= 0.6-26), matrixStats (>= 0.8.14), GenomicAlignments (>=
        1.1.16), GenomeInfoDb (>= 1.1.3), BiocGenerics (>= 0.11.3),
        digest(>= 0.6.8), graphics, grDevices, stats, utils
Suggests: BSgenome.Hsapiens.UCSC.hg19, xml2, BiocStyle, knitr,
        rmarkdown, testthat
biocViews: Visualization, Microarray, Sequencing
URL: https://github.com/ivanek/Gviz
BugReports: https://github.com/ivanek/Gviz/issues
VignetteBuilder: knitr
License: Artistic-2.0
Collate: 'utils.R' 'ImageMap-class.R' 'DisplayPars-class.R'
        'GdObject-class.R' 'ReferenceTrack-class.R'
        'SequenceTrack-class.R' 'RangeTrack-class.R'
        'StackedTrack-class.R' 'NumericTrack-class.R'
        'DataTrack-class.R' 'AlignmentsTrack-class.R'
        'AnnotationTrack-class.R' 'GeneRegionTrack-class.R'
        'BiomartGeneRegionTrack-class.R' 'CustomTrack-class.R'
        'GenomeAxisTrack-class.R' 'Gviz-defunct.R' 'Gviz-deprecated.R'
        'HighlightTrack-class.R' 'IdeogramTrack-class.R'
        'OverlayTrack-class.R' 'UcscTrack.R' 'collapsing.R'
        'datasets.R' 'exportTracks.R' 'grouping.R' 'plotTracks.R'
        'settings.R'
git_url: https://git.bioconductor.org/packages/Gviz
git_branch: RELEASE_3_19
git_last_commit: 2be307f
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-01 23:26:39 UTC; biocbuild
Author: Florian Hahne [aut],
  Steffen Durinck [aut],
  Robert Ivanek [aut, cre] (<https://orcid.org/0000-0002-8403-056X>),
  Arne Mueller [aut],
  Steve Lianoglou [aut],
  Ge Tan [aut],
  Lance Parsons [aut],
  Shraddha Pai [aut],
  Thomas McCarthy [ctb],
  Felix Ernst [ctb],
  Mike Smith [ctb]
Maintainer: Robert Ivanek <robert.ivanek@unibas.ch>
Built: R 4.4.0; ; 2024-05-02 12:56:06 UTC; windows
