# Generated by roxygen2: do not edit by hand

export(.HERONEpitopeDataSet)
export(.HERONProbeDataSet)
export(.HERONProteinDataSet)
export(.HERONSequenceDataSet)
export(HERONEpitopeDataSet)
export(HERONProbeDataSet)
export(HERONProteinDataSet)
export(HERONSequenceDataSet)
export(addSequenceAnnotations)
export(calcCombPValues)
export(calcEpitopePValues)
export(calcProbePValuesTPaired)
export(calcProbePValuesTUnpaired)
export(calcProteinPValues)
export(catSequences)
export(convertSequenceDSToProbeDS)
export(findBlocksProbeT)
export(findBlocksT)
export(findEpitopeSegments)
export(getEpitopeID)
export(getEpitopeIDsToProbeIDs)
export(getEpitopeProbeIDs)
export(getEpitopeProtein)
export(getEpitopeStart)
export(getEpitopeStop)
export(getKofN)
export(getProteinLabel)
export(getProteinStart)
export(getProteinTiling)
export(log2Transform)
export(makeEpitopeCalls)
export(makeProbeCalls)
export(makeProteinCalls)
export(min_max)
export(oneHitEpitopes)
export(oneHitProbes)
export(oneProbeEpitopes)
export(pvalue_to_zscore)
export(quantileNormalize)
export(smoothProbeDS)
exportClasses(HERONEpitopeDataSet)
exportClasses(HERONProbeDataSet)
exportClasses(HERONProteinDataSet)
exportClasses(HERONSequenceDataSet)
import(methods)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(IRanges,IRanges)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,mcols)
importFrom(SummarizedExperiment,rowRanges)
