Package: HERON
Type: Package
Date: 2023-06-23
Title: Hierarchical Epitope pROtein biNding
Version: 1.2.0
Authors@R: c(
    person(given="Sean",
           family = "McIlwain",
           role = c("aut", "cre"),
           email = "sean.mcilwain@wisc.edu",
           comment = c(ORCID="0000-0002-3820-8400")),
    person(given="Irene",
        family = "Ong",
        role = c("aut"),
        email = "irene.ong@wisc.edu",
        comment = c(ORCID="0000-0002-9353-6941"))
    )
Description: HERON is a software package for analyzing
    peptide binding array data. In addition to identifying 
    significant binding probes, HERON also provides functions 
    for finding epitopes (string of consecutive peptides 
    within a protein). HERON also calculates significance on 
    the probe, epitope, and protein level by employing meta 
    p-value methods.  HERON is designed for obtaining calls on the 
    sample level and calculates fractions of hits for different conditions.
License: GPL (>= 3)
URL: https://github.com/Ong-Research/HERON
BugReports: https://github.com/Ong-Research/HERON/issues
Encoding: UTF-8
LazyData: false
Imports: matrixStats, stats, data.table, harmonicmeanp, metap, cluster,
        spdep, Matrix, limma, methods
RoxygenNote: 7.2.3
biocViews: Microarray, Software, Sequencing, Coverage
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Depends: R (>= 4.3.0), SummarizedExperiment (>= 1.1.6), GenomicRanges,
        IRanges, S4Vectors
git_url: https://git.bioconductor.org/packages/HERON
git_branch: RELEASE_3_19
git_last_commit: 47a525a
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-01 23:26:03 UTC; biocbuild
Author: Sean McIlwain [aut, cre] (<https://orcid.org/0000-0002-3820-8400>),
  Irene Ong [aut] (<https://orcid.org/0000-0002-9353-6941>)
Maintainer: Sean McIlwain <sean.mcilwain@wisc.edu>
Built: R 4.4.0; ; 2024-05-02 12:56:43 UTC; windows
