Fast5Summary-class      An S4 class for summarised data from a MinION
                        sequencing run
IONiseR                 IONiseR: A package for assessing quality of
                        MinION data
baseCalled              Extract baseCalled slot
channelActivityPlot     Visualise a specified metric over all channels
                        over time.
channelHeatmap          Create layout plot of flowcell
eventData               Extract eventData slot
fast5toFastq            Extract FASTQ files from fast5 files
fastq                   Extract fastq slot
fastq2D                 Extract 2D reads
fastqComplement         Extract complement reads
fastqTemplate           Extract template reads
layoutPlot              Create layout plot of flowcell
muxHeatmap              Create layout plot of flowcell
plotActiveChannels      Plot the number of active channels for each
                        minute of run time
plotBaseProductionRate
                        Plot the mean rate at which bases are recorded
plotCurrentByTime       View changes in signal against run time.
plotEventRate           Plot the mean rate at which events occur
plotKmerFrequencyCorrelation
                        Display correlation between pentemer
                        proportions in two time windows
plotReadAccumulation    Plot the accumulation of reads over the
                        duration of the experiment.
plotReadCategoryCounts
                        Plot the proportion of template, complement and
                        2D reads found a dataset.
plotReadCategoryQuals   Visualise the mean base quality of each read
plotReadTypeProduction
                        View changes in signal against run time.
readFast5Log            Read the log entry from a single fast5 file
readFast5Summary        Read summary data from fast5 files.
readInfo                Extract readInfo slot
