Package: MAST
Type: Package
Title: Model-based Analysis of Single Cell Transcriptomics
Version: 1.30.0
Date: 2023-04-20
Authors@R: c(person("Andrew", "McDavid", email = "Andrew_McDavid@urmc.rochester.edu", role = c("aut", "cre")),
            person("Greg", "Finak", email="gfinak@fredhutch.org", role='aut'),
            person("Masanao", "Yajima", email="myajima@fredhutch.org", role='aut'))
VignetteBuilder: knitr
Imports: Biobase, BiocGenerics, S4Vectors, data.table, ggplot2, plyr,
        stringr, abind, methods, parallel, reshape2, stats, stats4,
        graphics, utils, SummarizedExperiment(>= 1.5.3), progress,
        Matrix
Depends: SingleCellExperiment (>= 1.2.0), R(>= 3.5)
Suggests: knitr, rmarkdown, testthat, lme4(>= 1.0), blme, roxygen2(>
        6.0.0), numDeriv, car, gdata, lattice, GGally, GSEABase, NMF,
        TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer,
        BiocStyle, scater, DelayedArray, HDF5Array, zinbwave, dplyr
Description: Methods and models for handling zero-inflated single cell
    assay data.
License: GPL(>= 2)
Collate: 'AllGenerics.R' 'AllClasses.R' 'CovFromBoots.R'
        'Fluidigm-methods.R' 'GSEA-by-boot.R' 'Hypothesis.R'
        'LmWrapper.R' 'MAST-package.R' 'MultidimensionalScaling.R'
        'RNASeqAssay-methods.R' 'Readers.R' 'SingleCellAssay-methods.R'
        'UtilityFunctions.R' 'ZlmFit-bootstrap.R' 'ZlmFit-logFC.R'
        'ZlmFit.R' 'bayesglm.R' 'convertMASTClassic.R'
        'ebayes-helpers.R' 'filterEval.R' 'helper-methods.R'
        'lmWrapper-bayesglm.R' 'lmWrapper-glm.R' 'lmWrapper-glmer.R'
        'lmWrapper-ridge.R' 'lrtest.R' 'predict.R' 'stat_ell.R'
        'thresholdSCRNA.R' 'zeroinf.R' 'zlmHooks.R'
RoxygenNote: 7.2.3
LazyData: true
biocViews: GeneExpression, DifferentialExpression, GeneSetEnrichment,
        RNASeq, Transcriptomics, SingleCell
BugReports: https://github.com/RGLab/MAST/issues
URL: https://github.com/RGLab/MAST/
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/MAST
git_branch: RELEASE_3_19
git_last_commit: da42c5a
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-01 23:54:05 UTC; biocbuild
Author: Andrew McDavid [aut, cre],
  Greg Finak [aut],
  Masanao Yajima [aut]
Maintainer: Andrew McDavid <Andrew_McDavid@urmc.rochester.edu>
Built: R 4.4.0; ; 2024-05-02 13:03:23 UTC; windows
