# Generated by roxygen2: do not edit by hand

export("authTok<-")
export("cacheDir<-")
export("clearCache<-")
export("databaseUrl<-")
export("showWarnings<-")
export("useCache<-")
export("verbose<-")
export(MgnifyClient)
export(authTok)
export(cacheDir)
export(clearCache)
export(databaseUrl)
export(doQuery)
export(getData)
export(getFile)
export(getMetadata)
export(getResult)
export(mgnify_analyses_from_samples)
export(mgnify_analyses_from_studies)
export(mgnify_client)
export(mgnify_download)
export(mgnify_get_analyses_metadata)
export(mgnify_get_analyses_phyloseq)
export(mgnify_get_analyses_results)
export(mgnify_get_download_urls)
export(mgnify_query)
export(mgnify_retrieve_json)
export(searchAnalysis)
export(searchFile)
export(showWarnings)
export(useCache)
export(verbose)
exportClasses(MgnifyClient)
exportMethods("authTok<-")
exportMethods("cacheDir<-")
exportMethods("clearCache<-")
exportMethods("databaseUrl<-")
exportMethods("showWarnings<-")
exportMethods("useCache<-")
exportMethods("verbose<-")
exportMethods(authTok)
exportMethods(cacheDir)
exportMethods(clearCache)
exportMethods(databaseUrl)
exportMethods(doQuery)
exportMethods(getData)
exportMethods(getFile)
exportMethods(getMetadata)
exportMethods(getResult)
exportMethods(searchAnalysis)
exportMethods(searchFile)
exportMethods(showWarnings)
exportMethods(useCache)
exportMethods(verbose)
import(MultiAssayExperiment)
import(TreeSummarizedExperiment)
import(mia)
importFrom(S4Vectors,SimpleList)
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,rowData)
importFrom(TreeSummarizedExperiment,rowTree)
importFrom(ape,read.tree)
importFrom(dplyr,"%>%")
importFrom(dplyr,bind_rows)
importFrom(dplyr,mutate_all)
importFrom(dplyr,na_if)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(httr,add_headers)
importFrom(httr,config)
importFrom(httr,content)
importFrom(httr,timeout)
importFrom(httr,write_disk)
importFrom(methods,is)
importFrom(methods,new)
importFrom(mia,checkTaxonomy)
importFrom(mia,loadFromBiom)
importFrom(plyr,llply)
importFrom(plyr,rbind.fill)
importFrom(reshape2,dcast)
importFrom(tidyjson,spread_all)
importFrom(urltools,"parameters<-")
importFrom(urltools,parameters)
importFrom(utils,read.csv2)
