.calculatePowerPTM	dot-calculatePowerPTM
.fixTerminus	dot-fixTerminus
.getNumSamplePTM	dot-getNumSamplePTM
.joinFasta	dot-joinFasta
.locateSites	dot-locateSites
.removeCutoffSites	dot-removeCutoffSites
annotSite	annotSite
dataProcessPlotsPTM	dataProcessPlotsPTM
dataSummarizationPTM	dataSummarizationPTM
dataSummarizationPTM_TMT	dataSummarizationPTM_TMT
designSampleSizePTM	designSampleSizePTM
DIANNtoMSstatsPTMFormat	DIANNtoMSstatsPTMFormat
FragPipetoMSstatsPTMFormat	FragPipetoMSstatsPTMFormat
fragpipe_annotation	fragpipe_annotation
fragpipe_annotation_protein	fragpipe_annotation_protein
fragpipe_input	fragpipe_input
fragpipe_input_protein	fragpipe_input_protein
groupComparisonPlotsPTM	groupComparisonPlotsPTM
groupComparisonPTM	groupComparisonPTM
locateMod	locateMod
locatePTM	locatePTM
MaxQtoMSstatsPTMFormat	MaxQtoMSstatsPTMFormat
maxq_lf_annotation	maxq_lf_annotation
maxq_lf_evidence	maxq_lf_evidence
maxq_tmt_annotation	maxq_tmt_annotation
maxq_tmt_evidence	maxq_tmt_evidence
MetamorpheusToMSstatsPTMFormat	MetamorpheusToMSstatsPTMFormat
MSstatsPTM	MSstatsPTM
MSstatsPTMSiteLocator	MSstatsPTMSiteLocator
PDtoMSstatsPTMFormat	PDtoMSstatsPTMFormat
pd_annotation	pd_annotation
pd_psm_input	pd_psm_input
pd_testing_output	pd_testing_output
ProgenesistoMSstatsPTMFormat	ProgenesistoMSstatsPTMFormat
PStoMSstatsPTMFormat	PStoMSstatsPTMFormat
raw.input	raw.input
raw.input.tmt	raw.input.tmt
SkylinetoMSstatsPTMFormat	SkylinetoMSstatsPTMFormat
SpectronauttoMSstatsPTMFormat	SpectronauttoMSstatsPTMFormat
spectronaut_annotation	spectronaut_annotation
spectronaut_input	spectronaut_input
summary.data	summary.data
summary.data.tmt	summary.data.tmt
tidyFasta	tidyFasta
