Package: RegionalST
Type: Package
Title: Investigating regions of interest and performing cross-regional
        analysis with spatial transcriptomics data
Version: 1.2.0
Authors@R: person(given = "Ziyi", 
                  family = "Li", 
                  role=c("aut", "cre"), 
                  email="zli16@mdanderson.org")
Description: This package analyze spatial transcriptomics data through cross-regional analysis. It selects regions of interest (ROIs) and identifys cross-regional cell type-specific differential signals. The ROIs can be selected using automatic algorithm or through manual selection. It facilitates manual selection of ROIs using a shiny application. 
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
RoxygenNote: 7.2.3
biocViews: Spatial, Transcriptomics, Reactome, KEGG
Depends: R (>= 4.3.0)
Imports: stats, grDevices, utils, ggplot2, dplyr, scater, gridExtra,
        BayesSpace, fgsea, magrittr, SingleCellExperiment,
        RColorBrewer, Seurat, S4Vectors, tibble, TOAST, assertthat,
        colorspace, shiny, SummarizedExperiment
Suggests: BiocStyle, knitr, rmarkdown, gplots, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/RegionalST
git_branch: RELEASE_3_19
git_last_commit: 4a6fc9d
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-02 01:23:27 UTC; biocbuild
Author: Ziyi Li [aut, cre]
Maintainer: Ziyi Li <zli16@mdanderson.org>
Built: R 4.4.0; ; 2024-05-02 13:22:27 UTC; windows
