HMDB_mapper_vec         Toy Input Transcription Data Set
compress_same_children
                        Compress Network by Merging Nodes with
                        Identical Children
cosmos_data             Create Cosmos Data
decompress_solution_network
                        Decompress Solution Network
decoupleRnival          DecoupleRnival
default_CARNIVAL_options
                        Setting Default CARNIVAL Options
display_node_neighboorhood
                        display_node_neighboorhood
extract_nodes_for_ORA   Extract COSMOS nodes for ORA analysis
filter_incohrent_TF_target
                        filter_incohrent_TF_target
format_COSMOS_res       format_COSMOS_res
gmt_to_dataframe        Convert gmt file to data frame
load_tf_regulon_dorothea
                        load transcription factor regulon
meta_network            Meta Prior Knowledge Network
meta_network_cleanup    meta_network_cleanup
prepare_metab_inputs    add metabolic compartment and metab__ prefix to
                        metabolite IDs
preprocess_COSMOS_metabolism_to_signaling
                        Preprocess COSMOS Inputs For Metabolism to
                        Signaling
preprocess_COSMOS_signaling_to_metabolism
                        Preprocess COSMOS Inputs For Signaling to
                        Metabolism
print.cosmos_data       Print Cosmos Data Summary Print a summary of
                        cosmos data.
reduce_solution_network
                        reduce_solution_network
run_COSMOS_metabolism_to_signaling
                        run COSMOS metabolism to signaling
run_COSMOS_signaling_to_metabolism
                        run COSMOS signaling to metabolism
toy_RNA                 Toy Input Transcription Data Set
toy_metabolic_input     Toy Metabolic Input Data
toy_network             Toy Input Network
toy_signaling_input     Toy Signaling Input
