Package: epialleleR
Title: Fast, Epiallele-Aware Methylation Caller and Reporter
Version: 1.12.0
Authors@R: 
  person(given = "Oleksii",
    family = "Nikolaienko",
    role = c("aut", "cre"),
    email = "oleksii.nikolaienko@gmail.com",
    comment = c(ORCID = "0000-0002-5910-4934"))
CommentMaintainer: Oleksii Nikolaienko <oleksii.nikolaienko@gmail.com>
Description: Epialleles are specific DNA methylation patterns that are
  mitotically and/or meiotically inherited. This package calls and reports
  cytosine methylation as well as frequencies of hypermethylated
  epialleles at the level of genomic regions or individual cytosines
  in next-generation sequencing data using binary alignment map (BAM) files as
  an input. Among other things, this package can also extract methylation
  patterns and assess allele specificity of methylation.
SystemRequirements: C++17, GNU make
NeedsCompilation: yes
Depends: R (>= 4.1)
Imports: stats, methods, utils, GenomicRanges, BiocGenerics,
        GenomeInfoDb, SummarizedExperiment, VariantAnnotation,
        data.table, Rcpp
LinkingTo: Rcpp, BH, Rhtslib, zlibbioc
Suggests: RUnit, knitr, rmarkdown, ggplot2, ggstance, gridExtra
License: Artistic-2.0
URL: https://github.com/BBCG/epialleleR
BugReports: https://github.com/BBCG/epialleleR/issues
Encoding: UTF-8
biocViews: DNAMethylation, Epigenetics, MethylSeq
RoxygenNote: 7.3.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/epialleleR
git_branch: RELEASE_3_19
git_last_commit: 69b8e8f
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
Packaged: 2024-05-01 22:43:09 UTC; biocbuild
Author: Oleksii Nikolaienko [aut, cre]
    (<https://orcid.org/0000-0002-5910-4934>)
Maintainer: Oleksii Nikolaienko <oleksii.nikolaienko@gmail.com>
Built: R 4.4.0; x86_64-w64-mingw32; 2024-05-02 12:46:39 UTC; windows
Archs: x64
