# Hierarchical ensemble method based on factor graph

## Documentation for package ‘fgga’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

fgga-package | FGGA: Factor Graph Gene ontology Annotation.
CfData | A set of characterized protein coding genes from the Cannis familiaris organism annotated to a target GO subgraph considering both experimental and electronic evidence.
createFolds | Data splitting function useful for binary classification tasks
fgga | Factor Graph Cross-Ontology Annotation model
fgga2bipartite | Forney Factor Graph model
fHierarchicalMeasures | Individual and hierarchical F-measures
fMeasures | Individual and hierarchical F-measures
fMeasuresByLevel | Individual and hierarchical F-measures
maxDistancegraphOnto | Maximum distance for a graph
msgFGGA | Message passing algorithm between nodes of the Forney Factor Graph
preCoreFG | Transitive closure processing of a cross-ontology DAG
svmOnto | Ontology-term predictions by binary SVM classifiers
svmTrain | Binary SVM classification models for individual Ontology-term predictions
tableTPG | Valid configurations for hidden variable nodes in a Forney Factor Graph
varianceOnto | The variance of the gaussian learning noise at individual Ontology-terms