Package: gmoviz
Type: Package
Title: Seamless visualization of complex genomic variations in GMOs and
        edited cell lines
Version: 1.16.0
Authors@R: c(
    person("Kathleen", "Zeglinski", email = "kathleen.zeglinski@csl.com.au", 
    role = c("cre", "aut")), 
    person("Arthur", "Hsu", email = "arthur.hsu@csl.com.au", role = "aut"), 
    person("Monther", "Alhamdoosh", email = "monther.alhamdoosh@csl.com.au", 
    role = "aut", comment = c(ORCID = "0000-0002-2411-1325")), 
    person("Constantinos", "Koutsakis", 
    email = "Constantinos.Koutsakis@csl.com.au", role = "aut"))
Description: Genetically modified organisms (GMOs) and cell lines are widely 
    used models in all kinds of biological research. As part of characterising
    these models, DNA sequencing technology and bioinformatics analyses are 
    used systematically to study their genomes. Therefore, large volumes of 
    data are generated and various algorithms are applied to analyse this data, 
    which introduces a challenge on representing all findings in an informative
    and concise manner. `gmoviz` provides users with an easy way to visualise 
    and facilitate the explanation of complex genomic editing events on a 
    larger, biologically-relevant scale. 
biocViews: Visualization, Sequencing, GeneticVariability,
        GenomicVariation, Coverage
Depends: circlize, GenomicRanges, graphics, R (>= 4.0)
Imports: grid, gridBase, Rsamtools, ComplexHeatmap, BiocGenerics,
        Biostrings, GenomeInfoDb, methods, GenomicAlignments,
        GenomicFeatures, IRanges, rtracklayer, pracma, colorspace,
        S4Vectors
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
Suggests: testthat, knitr, rmarkdown, pasillaBamSubset, BiocStyle,
        BiocManager
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/gmoviz
git_branch: RELEASE_3_19
git_last_commit: dc26406
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-01 23:15:29 UTC; biocbuild
Author: Kathleen Zeglinski [cre, aut],
  Arthur Hsu [aut],
  Monther Alhamdoosh [aut] (<https://orcid.org/0000-0002-2411-1325>),
  Constantinos Koutsakis [aut]
Maintainer: Kathleen Zeglinski <kathleen.zeglinski@csl.com.au>
Built: R 4.4.0; ; 2024-05-02 12:54:23 UTC; windows
