IBDsegment-class        IBDsegment instances and methods
IBDsegmentList-class    IBDsegmentList instances and methods
IBDsegmentList2excel    Store an IBD segment list in EXCEL / csv format
analyzeIBDsegments      Loop over extracted IBD segments to supply a
                        descriptive statistics
chr1ASW1000G            Example genotype data in 'vcf' format
compareIBDsegmentLists
                        Hierarchical clustering of IBD segments stored
                        in IBD segment list(s)
extractIBDsegments      Extract IBD segments from a 'fabia' result
findDenseRegions        Find accumulations of values via histogram
                        counts
hapFabia                IBD segment extraction by FABIA
hapFabiaVersion         Display version info for package 'hapFabia'
hapRes                  Example result of 'hapFabia'
identifyDuplicates      Identify duplicates of IBD segments
iterateIntervals        Loop over DNA intervals with a call of
                        'hapFabia'
makePipelineFile        Generate 'pipleline.R'
matrixPlot              Basic plot function for IBD segments
mergeIBDsegmentLists    Merging IBD segments
mergedIBDsegmentList    Example IBD segment list as a result of
                        'hapFabia'
plotIBDsegment          Plots an IBD segment given genotype data and
                        tagSNVs
res                     Example result of 'spfabia'
setAnnotation           Fills in annotations of tagSNVs of a list of
                        IBD segments
setStatistics           Computes and stores the statistics of an IBD
                        segment list
sim                     Similarity measures for IBD segments
simu                    Example simulation data for 'hapFabia'
simulateIBDsegments     Generates simulated genotyping data with IBD
                        segments
simulateIBDsegmentsFabia
                        Generates simulated genotyping data with IBD
                        segments for 'fabia'
split_sparse_matrix     Splits genotyping data in sparse matrix format
                        into intervals
toolsFactorizationClass
                        Tools to analyze results of 'fabia'
vcftoFABIA              Converting genotyping data from 'vcf' to sparse
                        matrix format
