Package: ideal
Type: Package
Title: Interactive Differential Expression AnaLysis
Version: 1.28.0
Date: 2024-04-07
Authors@R: c(person("Federico", "Marini", role = c("aut", "cre"), 
    email ="marinif@uni-mainz.de", 
    comment = c(ORCID = '0000-0003-3252-7758')))
Description: This package provides functions for an Interactive
    Differential Expression AnaLysis of RNA-sequencing datasets, to
    extract quickly and effectively information downstream the step
    of differential expression. A Shiny application encapsulates
    the whole package.
License: MIT + file LICENSE
Depends: topGO
Imports: DESeq2, SummarizedExperiment, GenomicRanges, IRanges,
        S4Vectors, ggplot2 (>= 2.0.0), heatmaply, plotly, pheatmap,
        pcaExplorer, IHW, gplots, UpSetR, goseq, stringr, dplyr, limma,
        GOstats, GO.db, AnnotationDbi, shiny (>= 0.12.0),
        shinydashboard, shinyBS, DT, rentrez, rintrojs, rlang, ggrepel,
        knitr, rmarkdown, shinyAce, BiocParallel, grDevices, base64enc,
        methods
Suggests: testthat, BiocStyle, markdown, airway, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg38.knownGene, DEFormats, edgeR
URL: https://github.com/federicomarini/ideal,
        https://federicomarini.github.io/ideal/
BugReports: https://github.com/federicomarini/ideal/issues
biocViews: ImmunoOncology, GeneExpression, DifferentialExpression,
        RNASeq, Sequencing, Visualization, QualityControl, GUI,
        GeneSetEnrichment, ReportWriting, ShinyApps
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/ideal
git_branch: RELEASE_3_19
git_last_commit: b369208
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-06-05
NeedsCompilation: no
Packaged: 2024-06-06 00:05:22 UTC; biocbuild
Author: Federico Marini [aut, cre] (<https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>
Built: R 4.4.0; ; 2024-06-06 19:49:25 UTC; windows
