Package: infercnv
Type: Package
Title: Infer Copy Number Variation from Single-Cell RNA-Seq Data
Version: 1.20.0
Date: 2023-12-01
Authors@R: c( person("Timothy", "Tickle", email = "ttickle@broadinstitute.org", role = "aut"), person("Itay", "Tirosh", email = "tirosh@broadinstitute.org", role = "aut"), person("Christophe", "Georgescu", email = "cgeorges@broadinstitute.org", role = c("aut", "cre")), person("Maxwell", "Brown", email = "mbrown@broadinstitute.org", role = "aut"), person("Brian", "Haas", email = "bhaas@broadinstitute.org", role = "aut")) 
BugReports: https://github.com/broadinstitute/inferCNV/issues
Description: Using single-cell RNA-Seq expression to visualize CNV in cells.
biocViews: Software, CopyNumberVariation, VariantDetection,
        StructuralVariation, GenomicVariation, Genetics,
        Transcriptomics, StatisticalMethod, Bayesian,
        HiddenMarkovModel, SingleCell
Depends: R(>= 4.0)
License: BSD_3_clause + file LICENSE
LazyData: TRUE
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, testthat
RoxygenNote: 7.2.3
NeedsCompilation: no
SystemRequirements: JAGS 4.x.y
Imports: graphics, grDevices, RColorBrewer, gplots, futile.logger,
        stats, utils, methods, ape, phyclust, Matrix, fastcluster,
        parallelDist, dplyr, HiddenMarkov, ggplot2, edgeR, coin,
        caTools, digest, RANN, igraph, reshape2, rjags, fitdistrplus,
        future, foreach, doParallel, Seurat, BiocGenerics,
        SummarizedExperiment, SingleCellExperiment, tidyr, parallel,
        coda, gridExtra, argparse
URL: https://github.com/broadinstitute/inferCNV/wiki
Collate: 'SplatterScrape.R' 'data.R' 'inferCNV.R' 'inferCNV_BayesNet.R'
        'inferCNV_HMM.R' 'inferCNV_constants.R' 'inferCNV_heatmap.R'
        'inferCNV_hidden_spike.R' 'inferCNV_i3HMM.R'
        'inferCNV_mask_non_DE.R' 'inferCNV_meanVarSim.R'
        'inferCNV_ops.R' 'inferCNV_simple_sim.R'
        'inferCNV_tumor_subclusters.R'
        'inferCNV_tumor_subclusters.random_smoothed_trees.R'
        'infercnv_sampling.R' 'noise_reduction.R'
        'seurat_interaction.R'
git_url: https://git.bioconductor.org/packages/infercnv
git_branch: RELEASE_3_19
git_last_commit: 441a7d9
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
Packaged: 2024-05-01 23:35:32 UTC; biocbuild
Author: Timothy Tickle [aut],
  Itay Tirosh [aut],
  Christophe Georgescu [aut, cre],
  Maxwell Brown [aut],
  Brian Haas [aut]
Maintainer: Christophe Georgescu <cgeorges@broadinstitute.org>
Built: R 4.4.0; ; 2024-05-02 12:58:57 UTC; windows
