Package: miaViz
Title: Microbiome Analysis Plotting and Visualization
Version: 1.12.0
Authors@R: 
    c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
             email = "tuomas.v.borman@utu.fi",
             comment = c(ORCID = "0000-0002-8563-8884")), 
      person(given = "Felix G.M.", family = "Ernst", role = c("aut"),
             email = "felix.gm.ernst@outlook.com",
             comment = c(ORCID = "0000-0001-5064-0928")),
      person(given = "Leo", family = "Lahti", role = c("aut"),
             email = "leo.lahti@iki.fi",
             comment = c(ORCID = "0000-0001-5537-637X")),
      person(given = "Basil", family = "Courbayre", role = c("ctb")),
      person(given = "Giulio", family = "Benedetti", role = c("ctb"),
             email = "giulio.benedetti@utu.fi",
             comment = c(ORCID = "0000-0002-8732-7692"))
	     )
Description: The miaViz package implements functions to visualize
    TreeSummarizedExperiment objects especially in the context of microbiome
    analysis. Part of the mia family of R/Bioconductor packages.
biocViews: Microbiome, Software, Visualization
License: Artistic-2.0 | file LICENSE
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0), SummarizedExperiment, TreeSummarizedExperiment,
        mia (>= 0.99), ggplot2, ggraph (>= 2.0)
Imports: methods, stats, S4Vectors, BiocGenerics, BiocParallel,
        DelayedArray, scater, ggtree, ggnewscale, viridis, tibble,
        tidytree, tidygraph, rlang, purrr, tidyr, dplyr, ape,
        DirichletMultinomial, ggrepel, SingleCellExperiment
Suggests: knitr, rmarkdown, BiocStyle, testthat, patchwork, vegan,
        microbiomeDataSets, bluster
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/miaViz
git_branch: RELEASE_3_19
git_last_commit: 945b0cc
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-02 00:03:28 UTC; biocbuild
Author: Tuomas Borman [aut, cre] (<https://orcid.org/0000-0002-8563-8884>),
  Felix G.M. Ernst [aut] (<https://orcid.org/0000-0001-5064-0928>),
  Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>),
  Basil Courbayre [ctb],
  Giulio Benedetti [ctb] (<https://orcid.org/0000-0002-8732-7692>)
Maintainer: Tuomas Borman <tuomas.v.borman@utu.fi>
Built: R 4.4.0; ; 2024-05-02 13:06:16 UTC; windows
