d67a7ab180fd7b5db9e3833645e2a455 *DESCRIPTION
f408de31d17d13d4f078215e2e79f551 *INDEX
c8288521cd308fc2dbea999ac2b1929a *LICENCE
70db86d2f80de970fa7ad1e9c69063a2 *Meta/Rd.rds
2b0f2e552c734b2a0e01262acf20e531 *Meta/data.rds
f4ca558a45c668f0871c058762cfafb9 *Meta/features.rds
6be2f5adc6a416f2864015b63d378cf5 *Meta/hsearch.rds
86a30babf4b2e7dbcdd8c6b5e29894f8 *Meta/links.rds
e5fb6c6bafcd38f760ee3d41d7513336 *Meta/nsInfo.rds
1543ef15ce0317196e442d957fe5bde3 *Meta/package.rds
b1ebabfd712314a4f934d11806653271 *Meta/vignette.rds
cd97df4080cedb8434313ed2c57430e4 *NAMESPACE
c7d9e7b4a6908a90eff98b922785792a *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/midasHLA
48e6ba32365f77622873e9b1cd7e90c1 *R/midasHLA.rdb
a016d6140d495e799929503f8b6582af *R/midasHLA.rdx
eea56b7f1c4737f1b159334fa15c80d4 *benchmark/prepareMiDAS_hla_aa.R
4175500f3b151ecc16b1a5abef7c3e69 *benchmark/prepareMiDAS_hla_alleles.R
de7e4687b3d27905577392616dbeca78 *benchmark/simulateHlaCalls.R
c2ef4f521f68878cb8c6cb15d3eb1c40 *benchmark/workflow_hla_aa.R
f4c769612ed04a0639977212ffd089c8 *benchmark/workflow_hla_alleles.R
8578756df18718cdd4b32ae746833bcb *data/Rdata.rdb
4d979aac6f2c91b44521d2922db54c31 *data/Rdata.rds
808027346f8d0be4987fddbacf1c19ea *data/Rdata.rdx
77a21985452cd7a0084a3db9b663b5f8 *doc/MiDAS_tutorial.R
3928d2cd35e119e79963aa95d6f1257a *doc/MiDAS_tutorial.Rmd
38b429ec45ae640aad3d8de07c8b61de *doc/MiDAS_tutorial.html
e7b82fe99349049340fdd7eac6f37065 *doc/MiDAS_vignette.R
344a60f787274b5f4aa79724ea89fa41 *doc/MiDAS_vignette.Rmd
37e52b78ec093691585371b5531c56dc *doc/MiDAS_vignette.html
0234d180ae9e6c514488138a1e6659f2 *doc/index.html
8ed469ccb70fb2c717deefc1fcad6a51 *extdata/A_prot.Rdata
0f68d661405a0b2864acb00d3066de0e *extdata/B_prot.Rdata
a5a97154e62c0a89538877d297f69b48 *extdata/C_prot.Rdata
50f68655c0c61b83c77ec3681f9e7a4a *extdata/DMA_prot.Rdata
26b2fec706e4f31680d1bfb2dddf261c *extdata/DMB_prot.Rdata
2e3894086fa9b2ab3c39eec025e3013c *extdata/DOA_prot.Rdata
00e84beae1bc93e476f8986ea2f2307c *extdata/DOB_prot.Rdata
a2040f3d011cd04aee3120b26567f208 *extdata/DPA1_prot.Rdata
8dac6051579fcb8a4a133aa467b4adcd *extdata/DPB1_prot.Rdata
078f4b01257c471cc72b3838600b9e28 *extdata/DQA1_prot.Rdata
e95c2be193cbec06d8da7f373d0a3ded *extdata/DQB1_prot.Rdata
db452d83a64da051cecd515e33faac06 *extdata/DRA_prot.Rdata
41b0cf04877d8924861b271298470630 *extdata/DRB1_prot.Rdata
ce83251037b320e1b22ca63e8e72274e *extdata/DRB3_prot.Rdata
114d0bcaf12590063e839b43ccffc0b6 *extdata/DRB4_prot.Rdata
84827bc86ca51e9d887f555d3695e7fd *extdata/DRB5_prot.Rdata
07ffaa637bacf64ae0f4b8be93acb2b0 *extdata/E_prot.Rdata
ff1a40cea5738b277f6a2c056933fa8d *extdata/F_prot.Rdata
9bc820939ab075d331e6ec541e12819a *extdata/G_prot.Rdata
5deae2ba75f0bed4e7908a9db7890a79 *extdata/HFE_prot.Rdata
85fbf3b8dc0a51cfe717b49da2d0bd1f *extdata/MICA_prot.Rdata
403f6f2d41b66f33a3906457ce9a0d6a *extdata/MICB_prot.Rdata
f2e31e1899d80e8b4fb8d86443baee8b *extdata/Match_allele_HLA-Bw_only_B.txt
8766a626e638a8415d4795d431420d36 *extdata/Match_allele_HLA-C_C1-2.txt
2a611bbefa22822411159738fe7a723a *extdata/Match_allele_HLA_Bw.txt
1441dcfccdb437271124fc1cd56393b7 *extdata/Match_allele_HLA_Ggroup.txt
44c00b2b003a7b270a161871b85027a1 *extdata/Match_allele_HLA_supertype.txt
7f33e0a29f5394acba46174257b28a23 *extdata/Match_counts_hla_kir_interactions.txt
dead200a7cde07cf8860f1c5267c5ff9 *extdata/Match_counts_kir_haplotypes.txt
4e6966a68e4c8bd7434bc2a56cd5e716 *extdata/Match_kir_haplotype_gene.txt
2d741ccc9ebe79dcad4aecbae3436327 *extdata/Match_kir_nomenclature_gene.txt
20695da4b6ffdadf6f603f8d45a07ca2 *extdata/MiDAS_tut_HLA.txt
3f0474e53e2acb36ea2e357d192bb644 *extdata/MiDAS_tut_KIR.txt
259d542308722e5e5552c4e6b5fe5787 *extdata/MiDAS_tut_pheno.txt
fd1034516e21e132795ca22563229da7 *extdata/TAP1_prot.Rdata
2de8ac5aaa37fcd09b2a5bad1b7a0bcc *extdata/TAP1_prot.fasta
099daba8d0fcece1df009ca4918ec04a *extdata/TAP1_prot.txt
30621541cdec17e6a98ac94aa54f98bf *extdata/TAP2_prot.Rdata
b2bca0a2d1709a468b5bd194e9639663 *extdata/grantham_distance_matrix.tsv
146aabcd4c3187b3964be86b09d039aa *extdata/test_Match_4digit_supertype.txt
a46797042a43c9d90d3535547b8e52ac *extdata/test_aa_variation.Rdata
2d316c6a61c266d88bf154e943cea82f *extdata/test_hla_analyze.Rdata
305f183b151d64a9af4e538ea46584e4 *extdata/test_hla_calls.Rdata
932c24c1eb50ecefddee6c0e66b57878 *extdata/test_hla_calls_res.Rdata
1f66674fd923cead4cf3cc8fdee6d145 *extdata/test_hla_kir_interactions.Rdata
6ad9bd2d90bbbacdf436b30c326532d2 *help/AnIndex
1809f9b1bbb30c00f12a5c57acc06e3f *help/aliases.rds
1df2459abfb973e86060c39932728047 *help/midasHLA.rdb
adf483fcf9c83f32e4964a0542fed05b *help/midasHLA.rdx
4e01010f32a1602f010c6e66fe133ff2 *help/paths.rds
95208c91b89d961ac115a20f72e960f8 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
fdd5aeb90d7e9db319fcc6113ed6e211 *scripts/download_extdata.R
f429d584b4143f1a92d44d1159c31c0e *scripts/parse_alignments.R
