Package: oncomix
Title: Identifying Genes Overexpressed in Subsets of Tumors from
        Tumor-Normal mRNA Expression Data
Version: 1.26.0
Author: Daniel Pique, John Greally, Jessica Mar
Maintainer: Daniel Pique <daniel.pique@med.einstein.yu.edu>
Description: This package helps identify mRNAs that are overexpressed in subsets
    of tumors relative to normal tissue. Ideal inputs would be paired tumor-normal
    data from the same tissue from many patients (>15 pairs). This unsupervised
    approach relies on the observation that oncogenes are characteristically
    overexpressed in only a subset of tumors in the population, and may help
    identify oncogene candidates purely based on differences in mRNA expression
    between previously unknown subtypes.
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, testthat, RMySQL
Imports: ggplot2, ggrepel, RColorBrewer, mclust, stats,
        SummarizedExperiment
VignetteBuilder: knitr
biocViews: GeneExpression, Sequencing
git_url: https://git.bioconductor.org/packages/oncomix
git_branch: RELEASE_3_19
git_last_commit: a0c2c6c
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-02 00:38:48 UTC; biocbuild
Built: R 4.4.0; ; 2024-05-02 13:13:41 UTC; windows
