oncoscanR-package	oncoscanR-package
adjust_loh	adjust_loh
armlevel_alt	armlevel_alt
get_amp_segments	get_amp_segments
get_gain_segments	get_gain_segments
get_hetloss_segments	get_hetloss_segments
get_homloss_segments	get_homloss_segments
get_loh_segments	get_loh_segments
get_loss_segments	get_loss_segments
get_oncoscan_coverage_from_bed	get_oncoscan_coverage_from_bed
load_ascat	load_ascat
load_chas	load_chas
merge_segments	merge_segments
oncoscanR	oncoscanR-package
oncoscan_na33.cov	oncoscan_na33.cov
prune_by_size	prune_by_size
score_avgcn	score_avgcn
score_estwgd	score_estwgd
score_gloh	score_gloh
score_loh	score_loh
score_lst	score_lst
score_mbalt	score_mbalt
score_nlst	score_nlst
score_td	score_td
segs.chas_example	segs.chas_example
trim_to_coverage	trim_to_coverage
workflow_oncoscan.ascat	workflow_oncoscan.ascat
workflow_oncoscan.chas	workflow_oncoscan.chas
