Package: orthogene
Type: Package
Title: Interspecies gene mapping
Version: 1.10.0
Authors@R: 
    c( 
     person(given = "Brian",
           family = "Schilder",
           role = c("cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191"))
    )      
Description: 
    `orthogene` is an R package for easy mapping of orthologous genes 
    across hundreds of species. It pulls up-to-date gene ortholog mappings 
    across **700+ organisms**. 
    It also provides various utility functions to aggregate/expand 
    common objects (e.g. data.frames, gene expression matrices, lists) 
    using **1:1**, **many:1**, **1:many** or **many:many** gene mappings, 
    both within- and between-species.  
URL: https://github.com/neurogenomics/orthogene
BugReports: https://github.com/neurogenomics/orthogene/issues
License: GPL-3
Depends: R (>= 4.1)
VignetteBuilder: knitr
biocViews: Genetics, ComparativeGenomics, Preprocessing, Phylogenetics,
        Transcriptomics, GeneExpression
Imports: dplyr, methods, stats, utils, Matrix, jsonlite, homologene,
        gprofiler2, babelgene, data.table, parallel, ggplot2, ggpubr,
        patchwork, DelayedArray, grr, repmis, ggtree, tools
Suggests: rworkflows, remotes, knitr, BiocStyle, markdown, rmarkdown,
        testthat (>= 3.0.0), piggyback, magick, GenomeInfoDbData, ape,
        phytools, rphylopic (>= 1.0.0), TreeTools, ggimage, OmaDB
RoxygenNote: 7.2.3
Encoding: UTF-8
Config/testthat/edition: 3
Config/rcmdcheck/_R_CHECK_FORCE_SUGGESTS_: false
git_url: https://git.bioconductor.org/packages/orthogene
git_branch: RELEASE_3_19
git_last_commit: a917cc2
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-02 00:43:34 UTC; biocbuild
Author: Brian Schilder [cre] (<https://orcid.org/0000-0001-5949-2191>)
Maintainer: Brian Schilder <brian_schilder@alumni.brown.edu>
Built: R 4.4.0; ; 2024-05-02 13:14:28 UTC; windows
