# Direct Access to Orbitrap Data and Beyond

## Documentation for package ‘rawrr’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.checkDllInMonoPath | Check if a file is contained in the environment variable 'MONO_PATH'.
.thermofisherlsmsUrl | URL for Thermo Fisher .NET assemblies
auc.rawrrChromatogram | deriving area under the curve (AUC)
basePeak | Base peak of a spectrum
buildRawrrExe | Build 'rawrr.exe' console application.
dependentScan | Retrieve dependent scan(s) of a scan listed in scan index
faimsVoltageOn | Is FAIMS Voltage on?
filter | determine scan numbers which match a specified filter
installRawFileReaderDLLs | Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
installRawrrExe | Download and install the 'rawrr.exe' console application
is.rawrrChromatogram | Function to check if an object is an instance of class 'rawrrChromatogram'
is.rawrrSpectrum | Function to check if an object is an instance of class 'rawrrSpectrum'
is.rawrrSpectrumSet | Function to check if an object is an instance of class 'rawrrSpectrumSet'
makeAccessor | Make accessor function for key value pair returned by RawFileReader
massRange | Acquisition/scan range of spectrum
masterScan | Retrieve master scan of scan listed in scan index
new_rawrrSpectrum | Create instances of class 'rawrrSpectrum'
plot.rawrrChromatogram | Plot 'rawrrChromatogram' objects
plot.rawrrChromatogramSet | Plot 'rawrrChromatogramSet' objects
plot.rawrrSpectrum | Basic plotting function for instances of 'rawrrSpectrum'
print.rawrrSpectrum | Print method imitate the look and feel of Thermo Fisher Scientific FreeStyle's output
rawrr | Reads spectral data from a raw file.
rawrr.exe | Download and install the 'rawrr.exe' console application
rawrrAssemblyPath | Derives the path where all .NET assemblies are stored.
rawrrSpectrum | Create 'rawrrSpectrum' objects
readChromatogram | Extracts chromatographic data from a raw file.
readFileHeader | read file header Information
readIndex | Read scan index
readSpectrum | Reads spectral data from a raw file.
readTrailer | Read and extract scan trailer from TFS raw files.
sample.raw | A small file size 'sample.raw' BLOB
sampleFilePath | A small file size 'sample.raw' BLOB
scanNumber | Accessor function for scan number of 'rawrrSpectrum' objects
summary.rawrrChromatogram | Text summary of chromatogram
summary.rawrrSpectrum | Basic summary function
Thermo | Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
ThermoFisher | Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
ThermoFisherScientific | Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
tic | Total ion current of a spectrum
validate_rawrrIndex | Validate output of the readIndex function
validate_rawrrSpectrum | Validate instance of class rawrrSpectrum