# Access and analyze public DNA methylation array data compilations

## Documentation for package ‘recountmethylation’ version 1.14.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ba.background | ba.background
ba.biotinstaining.grn | ba.background
ba.biotinstaining.red | ba.background
ba.bisulfiteconv1.grn | ba.background
ba.bisulfiteconv1.red | ba.background
ba.bisulfiteconv2 | ba.background
ba.extension.grn | ba.background
ba.extension.red | ba.background
ba.hybridization.hi.vs.med | ba.background
ba.hybridization.med.vs.low | ba.background
ba.nonpolymorphic.grn | ba.background
ba.nonpolymorphic.red | ba.background
ba.restoration | ba.background
ba.specificity1.grn | ba.background
ba.specificity1.red | ba.background
ba.specificity2 | ba.background
ba.targetremoval1 | ba.background
ba.targetremoval2 | ba.background
bactrl | bactrl
bathresh | Get BeadArray control outcomes from a matrix of metric signals
data_mdpost | Retrieve all available sample metadata from an HDF5 database.
gds_idat2rg | Get IDATs as an RGChannelSet from GEO/GDS
gds_idatquery | Query and download IDATs from GEO Data Sets
getdb | Access database files.
getdb_h5se_gm | Access database files.
getdb_h5se_gr | Access database files.
getdb_h5se_rg | Access database files.
getdb_h5se_test | Access database files.
getdb_h5_rg | Access database files.
getdb_h5_test | Access database files.
getrg | Query and store data from h5 file signal tables
get_crossreactive_cpgs | get_crossreactive_cpgs
get_fh | get_fh
get_qcsignal | get_qcsignal
get_rmdl | Get DNAm assay data.
get_servermatrix | get_servermatrix
hread | Query and store an HDF5 dataset on row and column indices.
make_si | make_si
matchds_1to2 | Match two datasets on rows and columns
query_si | query_si
rgse | Form an RGChannelSet from a list containing signal data matrices
servermatrix | servermatrix
setup_sienv | setup_sienv
smfilt | smfilt