# Reduce + Visualize GO

## Documentation for package ‘rrvgo’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

calculateSimMatrix | calculateSimMatrix Calculate the score similarity matrix between terms
getGoSize | getGoSize Get GO term size (# of genes)
getGoTerm | getGoTerm Get the description of a GO term
getTermDisp | getTermDisp Calculate the term dispensability score, defined as the semantic similarity threshold a term was assigned to a cluster (namely, the similarity of a term to the cluster representative term).
getTermUniq | getTermUniq Calculate the term uniqueness score, defined as 1 minus the average semantic similarity of a term to all other terms.
gg_color_hue | gg_color_hue Emulate ggplot2 color palette.
heatmapPlot | heatmapPlot Plot similarity matrix as a heatmap
loadOrgdb | loadOrgdb Load an orgdb object
reduceSimMatrix | reduceSimMatrix Reduce a set of GO terms based on their semantic similarity and scores.
scatterPlot | scatterPlot Plot GO terms as scattered points.
shiny_rrvgo | shiny_rrvgo Launch an interactive web interface.
treemapPlot | treemapPlot Plot GO terms as a treemap.
wordcloudPlot | wordlcoudPlot Plot GO reduced terms as a wordcloud.