Package: scMerge
Type: Package
Title: scMerge: Merging multiple batches of scRNA-seq data
Version: 1.20.0
Authors@R: c(
    person("Yingxin", "Lin", email = "yingxin.lin@sydney.edu.au", role = c("aut", "cre")
    ),
    person("Kevin", "Wang", email = "kevin.wang@sydney.edu.au", role = c("aut")
    ),
    person("Sydney Bioinformatics and Biometrics Group", email = "bioinformatics@maths.usyd.edu.au", role = c("fnd"))
    )
Description: Like all gene expression data, single-cell data suffers from 
    batch effects and other unwanted variations that makes accurate biological interpretations difficult. 
    The scMerge method leverages factor analysis, stably expressed genes (SEGs) and (pseudo-) replicates to 
    remove unwanted variations and merge multiple single-cell data. 
    This package contains all the necessary functions in the 
    scMerge pipeline, including the identification of SEGs, replication-identification methods, and 
    merging of single-cell data. 
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.6.0)
Imports: BiocParallel, BiocSingular, BiocNeighbors, cluster,
        DelayedArray, DelayedMatrixStats, distr, igraph, M3Drop (>=
        1.9.4), proxyC, ruv, cvTools, scater, batchelor, scran,
        methods, S4Vectors (>= 0.23.19), SingleCellExperiment (>=
        1.7.3), SummarizedExperiment
RoxygenNote: 7.2.3
Suggests: BiocStyle, covr, HDF5Array, knitr, Matrix, rmarkdown, scales,
        proxy, testthat, badger
VignetteBuilder: knitr
biocViews: BatchEffect, GeneExpression, Normalization, RNASeq,
        Sequencing, SingleCell, Software, Transcriptomics
URL: https://github.com/SydneyBioX/scMerge
BugReports: https://github.com/SydneyBioX/scMerge/issues
git_url: https://git.bioconductor.org/packages/scMerge
git_branch: RELEASE_3_19
git_last_commit: 0b5d058
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-02 01:46:14 UTC; biocbuild
Author: Yingxin Lin [aut, cre],
  Kevin Wang [aut],
  Sydney Bioinformatics and Biometrics Group [fnd]
Maintainer: Yingxin Lin <yingxin.lin@sydney.edu.au>
Built: R 4.4.0; ; 2024-05-02 13:29:26 UTC; windows
