# scMerge: Merging multiple batches of scRNA-seq data

## Documentation for package ‘scMerge’ version 1.20.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

example_sce | Subsetted mouse ESC 'SingleCellExperiment' object
fastRUVIII | A fast version of the ruv::RUVIII algorithm
getAdjustedMat | getAdjustedMat
ruvSimulate | Simulate a simple matrix or SingleCellExperiment to test internals of scMerge
sce_cbind | Combind several 'SingleCellExperiment' objects from different batches/experiments
scMerge | Perform the scMerge algorithm
scMerge2 | Perform the scMerge2 algorithm
scMerge2h | Perform the scMerge2 (hierarchical) algorithm
scReplicate | Create replicate matrix for scMerge algorithm
scRUVg | RUVg function for single cell (under development)
scRUVIII | scRUVIII: RUVIII algorithm optimised for single cell data
scSEGIndex | Single Cell Stably Express Gene Index
segList | Stably expressed gene list in official gene symbols for both human and mouse
segList_ensemblGeneID | Stably expressed gene list in EnsemblGeneID for both human and mouse