Package: tidyCoverage
Title: Extract and aggregate genomic coverage over features of interest
Version: 1.0.0
Date: 2023-11-09
Authors@R: 
    person("Jacques", "Serizay", , "jacquesserizay@gmail.com", 
        role = c("aut", "cre"))
Description: `tidyCoverage` framework enables tidy manipulation 
    of collections of genomic tracks and features using 
    `tidySummarizedExperiment` methods. It facilitates the 
    extraction, aggregation and visualization of genomic coverage over 
    individual or thousands of genomic loci, relying on `CoverageExperiment`
    and `AggregatedCoverage` classes. This accelerates the integration 
    of genomic track data in genomic analysis workflows. 
License: MIT + file LICENSE
URL: https://github.com/js2264/tidyCoverage
BugReports: https://github.com/js2264/tidyCoverage/issues
biocViews: Software, Sequencing, Coverage,
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.3.0), SummarizedExperiment
Imports: S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BiocParallel,
        BiocIO, rtracklayer, methods, tidyr, dplyr, fansi, pillar,
        rlang, cli, purrr, vctrs, stats
Suggests: tidySummarizedExperiment, plyranges, ggplot2,
        TxDb.Hsapiens.UCSC.hg19.knownGene, AnnotationHub,
        GenomicFeatures, BiocStyle, hues, knitr, rmarkdown,
        sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: false
git_url: https://git.bioconductor.org/packages/tidyCoverage
git_branch: RELEASE_3_19
git_last_commit: c67a165
git_last_commit_date: 2024-04-30
Repository: Bioconductor 3.19
Date/Publication: 2024-05-01
NeedsCompilation: no
Packaged: 2024-05-02 02:28:17 UTC; biocbuild
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Built: R 4.4.0; ; 2024-05-02 13:38:47 UTC; windows
