addCDS                  Add CDS to rowRanges of a transcript-level
                        SummarizedExperiment
addExons                Add exons to rowRanges of a transcript-level
                        SummarizedExperiment
addIds                  Add IDs to rowRanges of a SummarizedExperiment
getTximetaBFC           Get or set the directory of the BiocFileCache
                        used by tximeta
linkedTxome             Make and load linked transcriptomes
                        ("linkedTxome")
makeDGEList             Make a DGEList from tximeta output
retrieveCDNA            Retrieve the cDNA transcript sequence for a
                        SummarizedExperiment
retrieveDb              Retrieve the TxDb or EnsDb associated with a
                        SummarizedExperiment
splitSE                 Split SummarizedExperiment by gene categories
summarizeToGene,SummarizedExperiment-method
                        Summarize estimated quantitites to gene-level
tximeta                 Import transcript quantification with metadata
tximeta-package         Import transcript quantification with metadata
