Package: BioCor
Title: Functional similarities
Version: 1.30.0
Authors@R: c(
    person("Lluís", "Revilla Sancho", , "lluis.revilla@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9747-2570")),
    person("Pau", "Sancho-Bru", role = "ths",
           comment = c(ORCID = "0000-0001-5569-9259")),
    person("Juan José Salvatella", "Lozano", role = "ths",
           comment = c(ORCID = "0000-0001-7613-3908"))
  )
Description: Calculates functional similarities based on the pathways
    described on KEGG and REACTOME or in gene sets. These similarities can
    be calculated for pathways or gene sets, genes, or clusters and
    combined with other similarities. They can be used to improve
    networks, gene selection, testing relationships...
License: MIT + file LICENSE
URL: https://bioconductor.org/packages/BioCor,
        https://llrs.github.io/BioCor/
BugReports: https://github.com/llrs/BioCor/issues
Depends: R (>= 3.4.0)
Imports: BiocParallel, GSEABase, Matrix, methods
Suggests: airway, BiocStyle, boot, DESeq2, ggplot2 (>= 3.4.1),
        GOSemSim, Hmisc, knitr (>= 1.35), org.Hs.eg.db, reactome.db,
        rmarkdown, spelling, targetscan.Hs.eg.db, testthat (>= 3.0.0),
        WGCNA
VignetteBuilder: knitr
biocViews: StatisticalMethod, Clustering, GeneExpression, Network,
        Pathways, NetworkEnrichment, SystemsBiology
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
git_url: https://git.bioconductor.org/packages/BioCor
git_branch: RELEASE_3_20
git_last_commit: c0e4197
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 01:26:39 UTC; biocbuild
Author: Lluís Revilla Sancho [aut, cre]
    (<https://orcid.org/0000-0001-9747-2570>),
  Pau Sancho-Bru [ths] (<https://orcid.org/0000-0001-5569-9259>),
  Juan José Salvatella Lozano [ths]
    (<https://orcid.org/0000-0001-7613-3908>)
Maintainer: Lluís Revilla Sancho <lluis.revilla@gmail.com>
Built: R 4.4.1; ; 2024-10-30 15:29:38 UTC; windows
