Package: CBEA
Title: Competitive Balances for Taxonomic Enrichment Analysis in R
Version: 1.6.0
Date: 2022-03-03
Authors@R: 
    person("Quang", "Nguyen", , "quangpmnguyen@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2072-3279"))
Description: This package implements CBEA, a method to perform set-based
    analysis for microbiome relative abundance data. This approach
    constructs a competitive balance between taxa within the set and
    remainder taxa per sample. More details can be found in the Nguyen et
    al. 2021+ manuscript. Additionally, this package adds support
    functions to help users perform taxa-set enrichment analyses using
    existing gene set analysis methods.  In the future we hope to also
    provide curated knowledge driven taxa sets.
License: MIT + file LICENSE
URL: https://github.com/qpmnguyen/CBEA,
        https://qpmnguyen.github.io/CBEA/
BugReports: https://github.com/qpmnguyen/CBEA//issues
Depends: R (>= 4.2.0)
Imports: BiocParallel, BiocSet, dplyr, lmom, fitdistrplus, magrittr,
        methods, mixtools, Rcpp (>= 1.0.7), stats,
        SummarizedExperiment, tibble, TreeSummarizedExperiment, tidyr,
        glue, generics, rlang, goftest
Suggests: phyloseq, BiocStyle, covr, knitr, RefManageR, rmarkdown,
        sessioninfo, testthat (>= 3.0.0), tidyverse, roxygen2, mia,
        purrr
LinkingTo: Rcpp
VignetteBuilder: knitr
biocViews: Software, Microbiome, Metagenomics, GeneSetEnrichment,
        DataImport
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
git_url: https://git.bioconductor.org/packages/CBEA
git_branch: RELEASE_3_20
git_last_commit: f7c6c6e
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: yes
Packaged: 2024-10-30 01:34:16 UTC; biocbuild
Author: Quang Nguyen [aut, cre] (<https://orcid.org/0000-0002-2072-3279>)
Maintainer: Quang Nguyen <quangpmnguyen@gmail.com>
Built: R 4.4.1; x86_64-w64-mingw32; 2024-10-30 15:34:04 UTC; windows
Archs: x64
