clin.crc                Colon cancer clinical dataset
cnvgr.18.auto           Probe annotation file for Affymetrix Genome
                        Wide Human SNP Array 6.0
comp.heatmap            A comprehensive heatmap function that plots
                        Chromosome and Cytoband heatmaps
cyto.cin4heatmap        Cytoband CIN T-test output
cytobands.cin           Cytoband CIN dataset
extract.genes.in.cyto.regions
                        Given an input of cytobands, it outputs a list
                        of genes that are present in the cytoband
                        regions
geneAnno                CDS gene annotation file
grl.data                Output of segmentation algorithm
hg18.ucsctrack          Human reference annotation file
run.cin.chr             Calculate chromosome CIN
run.cin.cyto            Calculate cytoband CIN
snpgr.18.auto           Probe annotation file for Affymetrix Genome
                        Wide Human SNP Array 6.0
ttest.cyto.cin.heatmap
                        Performs T test on cytoband level CIN data, and
                        plots heatmap
