# Infers clonal composition of a tumor

## Documentation for package ‘Clomial’ version 1.42.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Clomial-package | Fits a binomial model to data from multiple samples of a single tumor to infer its clonal decomposition.
breastCancer | Breast cancer data for clonal decomposition.
choose.best | Chooses the best trained Clomial model.
Clomial | Fits several binomial models to data from multiple samples of a single tumor.
Clomial.generate.data | Generates simulated data to test performance of Clomial algorithm.
Clomial.iterate | Runs EM iterations until convergence of the Clomial model.
Clomial.likelihood | Computes the complete data log-likelihood of a Clomial model.
Clomial1000 | Pre-computed results of Clomial.
compute.bic | Computes BIC for a Clomial model.
compute.errors | Computes the error of a Clomial model.