Package: FindIT2
Title: find influential TF and Target based on multi-omics data
Version: 1.12.0
Authors@R: 
    c(
    person("Guandong", "Shang", role = c("aut", "cre"),
    email = "shangguandong1996@163.com",
    comment = c(ORCID = "0000-0002-9509-0314"))
    )
Description: This package implements functions to find influential TF and target
    based on different input type. It have five module:
    Multi-peak multi-gene annotaion(mmPeakAnno module), 
    Calculate regulation potential(calcRP module), 
    Find influential Target based on ChIP-Seq and RNA-Seq data(Find influential Target module), 
    Find influential TF based on different input(Find influential TF module), 
    Calculate peak-gene or peak-peak correlation(peakGeneCor module).
    And there are also some other useful function like integrate different source 
    information, calculate jaccard similarity for your TF.
License: Artistic-2.0
URL: https://github.com/shangguandong1996/FindIT2
BugReports: https://support.bioconductor.org/t/FindIT2
biocViews: Software, Annotation, ChIPSeq, ATACSeq, GeneRegulation,
        MultipleComparison, GeneTarget
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Suggests: BiocStyle, knitr, rmarkdown, sessioninfo, testthat (>=
        3.0.0), TxDb.Athaliana.BioMart.plantsmart28
VignetteBuilder: knitr
Depends: GenomicRanges, R (>= 3.5.0)
Imports: withr, BiocGenerics, GenomeInfoDb, rtracklayer, S4Vectors,
        GenomicFeatures, dplyr, rlang, patchwork, ggplot2,
        BiocParallel, qvalue, stringr, utils, stats, ggrepel, tibble,
        tidyr, SummarizedExperiment, MultiAssayExperiment, IRanges,
        progress, purrr, glmnet, methods
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/FindIT2
git_branch: RELEASE_3_20
git_last_commit: 1bcb4fc
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 02:43:41 UTC; biocbuild
Author: Guandong Shang [aut, cre] (<https://orcid.org/0000-0002-9509-0314>)
Maintainer: Guandong Shang <shangguandong1996@163.com>
Built: R 4.4.1; ; 2024-10-30 15:53:52 UTC; windows
