Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.48.0
Date: 2021-11-22
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Daniel Lai <dalai@bccrc.ca>
Import: data.table
Depends: R (>= 2.10.0), data.table (>= 1.11.8)
Description: Corrects GC and mappability biases for readcounts (i.e.
        coverage) in non-overlapping windows of fixed length for single
        whole genome samples, yielding a rough estimate of copy number
        for furthur analysis.  Designed for rapid correction of high
        coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariation, Microarray
git_url: https://git.bioconductor.org/packages/HMMcopy
git_branch: RELEASE_3_20
git_last_commit: fde7ccb
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: yes
Packaged: 2024-10-30 03:18:59 UTC; biocbuild
Built: R 4.4.1; x86_64-w64-mingw32; 2024-10-30 16:03:55 UTC; windows
Archs: x64
