HTClist2gi_list         HTClist2gi_list
HiCDCPlus               HiCDCPlus
HiCDCPlus_chr           HiCDCPlus_chr
HiCDCPlus_parallel      HiCDCPlus_parallel
add_1D_features         add_1D_features
add_2D_features         add_2D_features
add_hic_counts          add_hic_counts
add_hicpro_allvalidpairs_counts
                        add_hicpro_allvalidpairs_counts
add_hicpro_matrix_counts
                        add_hicpro_matrix.counts
construct_features      construct_features
construct_features_chr
                        construct_features_chr
construct_features_parallel
                        construct_features_parallel
expand_1D_features      expand_1D_features
extract_hic_eigenvectors
                        extract_hic_eigenvectors
generate_binned_gi_list
                        generate_binned_gi_list
generate_bintolen_gi_list
                        generate_bintolen_gi_list
generate_df_gi_list     generate_df_gi_list
get_chr_sizes           get_chr_sizes
get_chrs                get_chrs
get_enzyme_cutsites     get_enzyme_cutsites
gi_list2HTClist         gi_list2HTClist
gi_list_Dthreshold.detect
                        gi_list_Dthreshold_detect
gi_list_binsize_detect
                        gi_list_binsize_detect
gi_list_read            gi_list_read
gi_list_topdom          gi_list_topdom
gi_list_validate        gi_list_validate
gi_list_write           gi_list_write
hic2icenorm_gi_list     hic2icenorm_gi_list
hicdc2hic               hicdc2hic
hicdcdiff               hicdcdiff
straw                   straw
straw_dump              straw_dump
