Package: INSPEcT
Type: Package
Title: Modeling RNA synthesis, processing and degradation with RNA-seq
        data
Version: 1.36.0
Date: 2020-08-09
Author: Stefano de Pretis
Maintainer: Stefano de Pretis <ste.depo@gmail.com>,
 Mattia Furlan <Mattia.Furlan@iit.it>
Description: INSPEcT (INference of Synthesis, Processing and 
	dEgradation rates from Transcriptomic data) RNA-seq data
	in time-course experiments or steady-state conditions, with
	or without the support of nascent RNA data.
License: GPL-2
Depends: R (>= 3.6), methods, Biobase, BiocParallel
Imports: pROC, deSolve, rootSolve, KernSmooth, readxl, GenomicFeatures,
        GenomicRanges, IRanges, BiocGenerics, GenomicAlignments,
        Rsamtools, S4Vectors, GenomeInfoDb, DESeq2, plgem, rtracklayer,
        SummarizedExperiment, TxDb.Mmusculus.UCSC.mm9.knownGene, shiny
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Sequencing, RNASeq, GeneRegulation, TimeCourse,
        SystemsBiology
NeedsCompilation: no
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/INSPEcT
git_branch: RELEASE_3_20
git_last_commit: ce54116
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
Packaged: 2024-10-30 03:34:33 UTC; biocbuild
Built: R 4.4.1; ; 2024-10-30 16:05:58 UTC; windows
