# Generated by roxygen2: do not edit by hand

export(addLogo)
export(addMotifAnnotation)
export(addSignificantGenes)
export(aucScores)
export(calcAUC)
export(cisTarget)
export(convertToTargetRegions)
export(getColumnNames)
export(getDbRegionsLoc)
export(getMotifAnnotation)
export(getRowNames)
export(getSignificantGenes)
export(importAnnotations)
export(importRankings)
export(rankingRcisTarget)
export(reRank)
export(showLogo)
exportClasses(rankingRcisTarget)
exportMethods(colnames)
exportMethods(getAUC)
exportMethods(getMaxRank)
exportMethods(getNumColsInDB)
exportMethods(getRanking)
exportMethods(ncol)
exportMethods(nrow)
exportMethods(rownames)
exportMethods(show)
import(GSEABase, except = c(union, intersect, setdiff))
import(data.table, except = c(shift, last, first, between))
import(dplyr)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importClassesFrom(tibble,tbl_df)
importFrom(AUCell,getAUC)
importFrom(AUCell,getRanking)
importFrom(BiocGenerics,colnames)
importFrom(BiocGenerics,ncol)
importFrom(BiocGenerics,nrow)
importFrom(BiocGenerics,rownames)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,sortSeqlevels)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,pintersect)
importFrom(GenomicRanges,width)
importFrom(R.utils,capitalize)
importFrom(S4Vectors,elementMetadata)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(arrow,FeatherReader)
importFrom(arrow,ParquetFileReader)
importFrom(arrow,ReadableFile)
importFrom(arrow,read_feather)
importFrom(arrow,read_parquet)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(methods,isClass)
importFrom(methods,new)
importFrom(methods,slotNames)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(tibble,as_tibble)
importFrom(utils,head)
importFrom(utils,installed.packages)
importFrom(utils,read.table)
importMethodsFrom(SummarizedExperiment,assay)
importMethodsFrom(SummarizedExperiment,assayNames)
importMethodsFrom(SummarizedExperiment,assays)
