Package: SpatialCPie
Title: Cluster analysis of Spatial Transcriptomics data
Version: 1.22.0
Authors@R: 
    person(
        "Joseph", "Bergenstraahle",
        email = "joseph.bergenstrahle@gmail.com",
        role = c("aut", "cre")
    )
Description: 
    SpatialCPie is an R package designed to facilitate cluster evaluation for
    spatial transcriptomics data by providing intuitive visualizations that
    display the relationships between clusters in order to guide the user during
    cluster identification and other downstream applications.
    The package is built around a shiny "gadget" to allow the exploration of the
    data with multiple plots in parallel and an interactive UI. The user can
    easily toggle between different cluster resolutions in order to choose the
    most appropriate visual cues.
biocViews: Transcriptomics, Clustering, RNASeq, Software
Depends: R (>= 3.6)
Imports: colorspace (>= 1.3-2), data.table (>= 1.12.2), digest (>=
        0.6.21), dplyr (>= 0.7.6), ggforce (>= 0.3.0), ggiraph (>=
        0.5.0), ggplot2 (>= 3.0.0), ggrepel (>= 0.8.0), grid (>=
        3.5.1), igraph (>= 1.2.2), lpSolve (>= 5.6.13), methods (>=
        3.5.0), purrr (>= 0.2.5), readr (>= 1.1.1), rlang (>= 0.2.2),
        shiny (>= 1.1.0), shinycssloaders (>= 0.2.0), shinyjs (>= 1.0),
        shinyWidgets (>= 0.4.8), stats (>= 3.6.0), SummarizedExperiment
        (>= 1.10.1), tibble (>= 1.4.2), tidyr (>= 0.8.1), tidyselect
        (>= 0.2.4), tools (>= 3.6.0), utils (>= 3.5.0), zeallot (>=
        0.1.0)
Suggests: BiocStyle (>= 2.8.2), jpeg (>= 0.1-8), knitr (>= 1.20),
        rmarkdown (>= 1.10), testthat (>= 2.0.0)
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 6.1.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/SpatialCPie
git_branch: RELEASE_3_20
git_last_commit: 7688f5e
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 05:47:16 UTC; biocbuild
Author: Joseph Bergenstraahle [aut, cre]
Maintainer: Joseph Bergenstraahle <joseph.bergenstrahle@gmail.com>
Built: R 4.4.1; ; 2024-10-30 16:50:22 UTC; windows
