# Bump Hunter

## Documentation for package ‘bumphunter’ version 1.48.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

annotateNearest | Annotate the results of nearest
annotateTranscripts | Annotate transcripts
boundedClusterMaker | Make clusters of genomic locations based on distance
bumphunter | Bumphunter
bumphunter-method | Bumphunter
bumphunter-methods | Bumphunter
bumphunterEngine | Bumphunter
clusterMaker | Make clusters of genomic locations based on distance
dummyData | Generate dummy data for use with bumphunter functions
getSegments | Segment a vector into positive, zero, and negative regions
locfitByCluster | Apply local regression smoothing to values within each spatially-defined cluster.
loessByCluster | Apply loess smoothing to values within each spatially-defined cluster.
matchGenes | Find and annotate closest genes to genomic regions
print.bumps | Bumphunter
regionFinder | Find non-zero regions in vector
runmedByCluster | Apply running median smoothing to values within each spatially-defined cluster
smoother | Smooth genomic profiles
TT | Example data