# Visualization Techniques for Clonal Evolution

## Documentation for package ‘clevRvis’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

clevRvis | Visualization Techniques for Clonal Evolution
clevRvisShiny | A user interface to perform all analyses with clevRvis.
clevRvis_package | Visualization Techniques for Clonal Evolution
cloneFamily | Class seaObject
cloneFamily-method | Class seaObject
cloneFamily<- | Class seaObject
cloneFamily<--method | Class seaObject
cloneLabels | Class seaObject
cloneLabels-method | Class seaObject
cloneLabels<- | Class seaObject
cloneLabels<--method | Class seaObject
col | Class seaObject
col-method | Class seaObject
col<- | Class seaObject
col<--method | Class seaObject
combinedPlot | Generate a combined basic graph and detailed visualization of clonal evolution
createSeaObject | Create a seaObject
defaultLabels | Class seaObject
defaultLabels-method | Class seaObject
defaultLabels<- | Class seaObject
defaultLabels<--method | Class seaObject
dolphinPlot | Generate a detailed visualization of clonal evolution
exploreTrees | Explore alternative trees
extSharkPlot | Generate an extended graph visualization of clonal evolution
fracTable | Class seaObject
fracTable-method | Class seaObject
fracTable<- | Class seaObject
fracTable<--method | Class seaObject
nestLevels | Class seaObject
nestLevels-method | Class seaObject
nestLevels<- | Class seaObject
nestLevels<--method | Class seaObject
originTimepoint | Class seaObject
originTimepoint-method | Class seaObject
originTimepoint<- | Class seaObject
originTimepoint<--method | Class seaObject
parents | Class seaObject
parents-method | Class seaObject
parents<- | Class seaObject
parents<--method | Class seaObject
plaicePlot | Generate an allele-aware visualization of clonal evolution
seaObject-class | Class seaObject
sharkPlot | Generate a basic graph visualization of clonal evolution
show | Class seaObject
show-method | Class seaObject
timepoints | Class seaObject
timepoints-method | Class seaObject
timepoints<- | Class seaObject
timepoints<--method | Class seaObject
xpos | Class seaObject
xpos-method | Class seaObject
xpos<- | Class seaObject
xpos<--method | Class seaObject
ybtm | Class seaObject
ybtm-method | Class seaObject
ybtm<- | Class seaObject
ybtm<--method | Class seaObject
ytop | Class seaObject
ytop-method | Class seaObject
ytop<- | Class seaObject
ytop<--method | Class seaObject