# Generated by roxygen2: do not edit by hand

S3method(ggplot_add,geom_kegg)
S3method(ggplot_add,geom_node_rect_kegg)
S3method(ggplot_add,geom_node_rect_multi)
S3method(ggplot_add,overlay_raw_map)
S3method(ggplot_add,stamp)
export(add_title)
export(append_cp)
export(append_label_position)
export(assign_deseq2)
export(carrow)
export(combine_with_bnlearn)
export(convert_id)
export(create_test_module)
export(create_test_network)
export(create_test_pathway)
export(edge_matrix)
export(edge_numeric)
export(edge_numeric_sum)
export(geom_kegg)
export(geom_node_rect)
export(geom_node_rect_kegg)
export(geom_node_rect_multi)
export(geom_node_shadowtext)
export(get_module_attribute)
export(get_network_attribute)
export(ggkegg)
export(ggkeggsave)
export(ggplot_add.geom_kegg)
export(ggplot_add.geom_node_rect_kegg)
export(ggplot_add.geom_node_rect_multi)
export(ggplot_add.overlay_raw_map)
export(highlight_entities)
export(highlight_module)
export(highlight_set_edges)
export(highlight_set_nodes)
export(module)
export(module_abundance)
export(module_completeness)
export(module_text)
export(multi_pathway_native)
export(network)
export(network_graph)
export(node_matrix)
export(node_numeric)
export(obtain_sequential_module_definition)
export(output_overlay_image)
export(overlay_raw_map)
export(pathway)
export(pathway_abundance)
export(pathway_info)
export(plot_kegg_network)
export(plot_module_blocks)
export(plot_module_text)
export(process_line)
export(process_reaction)
export(rawMap)
export(rawValue)
export(return_line_compounds)
export(stamp)
import(BiocFileCache)
import(ggplot2)
import(ggraph)
import(gtable)
import(igraph)
import(magick)
import(patchwork)
importFrom(XML,getNodeSet)
importFrom(XML,xmlApply)
importFrom(XML,xmlAttrs)
importFrom(XML,xmlElementsByTagName)
importFrom(XML,xmlParse)
importFrom(data.table,":=")
importFrom(data.table,fread)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,row_number)
importFrom(dplyr,summarise)
importFrom(dplyr,tibble)
importFrom(dplyr,ungroup)
importFrom(grDevices,as.raster)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(igraph,delete_vertex_attr)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,induced.subgraph)
importFrom(methods,new)
importFrom(shadowtext,GeomShadowText)
importFrom(stats,setNames)
importFrom(stats,weighted.mean)
importFrom(stringr,str_extract)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_locate_all)
importFrom(stringr,str_pad)
importFrom(tibble,as_tibble)
importFrom(tibble,is_tibble)
importFrom(tidygraph,.G)
importFrom(tidygraph,activate)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,bind_edges)
importFrom(tidygraph,bind_nodes)
importFrom(tidygraph,graph_join)
importFrom(tidygraph,tbl_graph)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,tail)
