# Estimate the cell composition of whole blood in DNA methylation samples

## Documentation for package ‘methylCC’ version 1.20.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.extract_raw_data | Extract raw data
.find_dmrs | Finding differentially methylated regions
.initializeMLEs | .initializeMLEs
.initialize_theta | .initialize_theta
.methylcc_engine | .methylcc_engine
.methylcc_estep | Expectation step
.methylcc_mstep | Maximization step
.pick_target_positions | Pick target positions
.preprocess_estimatecc | .preprocess_estimatecc
.splitit | .splitit
.WFun | Helper function to take the product of Z and cell composition estimates
cell_counts | Generic function that returns the cell composition estimates
cell_counts-method | Generic function that returns the cell composition estimates
estimatecc | Estimate cell composition from DNAm data
estimatecc-class | the estimatecc class
FlowSorted.Blood.450k.sub | A reduced size of the FlowSorted.Blood.450k dataset
offMethRegions | Unmethylated regions for all celltypes
onMethRegions | Methylated regions for all celltypes