add_genome_matches      Add genome matches
add_inverse_strand      Add inverse strand
add_seq                 Add sequence to GRanges
add_target_matches      Add target matches
bed_to_granges          Read bedfile into GRanges
char_to_granges         Convert character vector into GRanges
double_flank            Double flank
extend_for_pe           Extend ranges for prime editing
extend_pe_to_gg         Extend prime editing target to find GG sites
extract_matchranges     Extract matching subranges
extract_subranges       Extract subranges
find_gg                 Find GG
find_primespacers       Find prime editing spacers
find_spacers            Find crispr spacers in targetranges
genes_to_granges        Convert geneids into GRanges
gr2dt                   GRanges <-> data.table
has_been_indexed        Has been indexed?
index_genome            Index genome
index_targets           Index targets
plot_intervals          Interval plot GRanges
plot_karyogram          Karyo/Interval Plot GRanges(List)
score_ontargets         Add on-target efficiency scores
up_flank                Extend or Flank GRanges
write_ranges            Write GRanges to file
