Package: plyinteractions
Title: Extending tidy verbs to genomic interactions
Description: Operate on `GInteractions` objects as tabular data using 
    `dplyr`-like verbs. The functions and methods in `plyinteractions`
    provide a grammatical approach to manipulate `GInteractions`, to 
    facilitate their integration in genomic analysis workflows. 
Version: 1.4.0
Date: 2023-08-21
Authors@R: 
    c(person("Jacques", "Serizay", , "jacquesserizay@gmail.com",
        role = c("aut", "cre")
    ))
License: Artistic-2.0
URL: https://github.com/js2264/plyinteractions
BugReports: https://github.com/js2264/plyinteractions/issues
biocViews: Software, Infrastructure
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Imports: InteractionSet, GenomeInfoDb, BiocGenerics, GenomicRanges,
        plyranges, IRanges, S4Vectors, rlang, dplyr, tibble,
        tidyselect, methods, utils
Suggests: tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings,
        BiocParallel, scales, HiContactsData, rtracklayer, BiocStyle,
        covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0),
        RefManageR
Config/testthat/edition: 3
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Collate: 'AllGenerics.R' 'AllClasses.R' 'add_pairdist.R' 'anchor.R'
        'annotate.R' 'arrange.R' 'count-overlaps.R' 'count.R' 'data.R'
        'export.R' 'filter-overlaps.R' 'filter.R' 'find-overlaps.R'
        'flank.R' 'ginteractions-construct.R' 'ginteractions-env.R'
        'ginteractions-getters.R' 'ginteractions-scoping.R'
        'ginteractions-setters.R' 'tbl_vars.R' 'group_data.R'
        'group_by.R' 'internals.R' 'join-overlap-left.R'
        'methods-AnchoredPinnedGInteractions.R'
        'methods-DelegatingGInteractions.R'
        'methods-GroupedGInteractions.R'
        'methods-PinnedGInteractions.R' 'methods-show.R' 'mutate.R'
        'pair-granges.R' 'pin.R' 'plyinteractions.R'
        'reexports-dplyr.R' 'reexports-plyranges.R' 'reexports.R'
        'rename.R' 'replace-anchors.R' 'select.R' 'shift.R' 'slice.R'
        'stretch.R' 'summarize.R'
LazyData: false
Depends: R (>= 4.3.0)
git_url: https://git.bioconductor.org/packages/plyinteractions
git_branch: RELEASE_3_20
git_last_commit: f0dc217
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 04:57:08 UTC; biocbuild
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Built: R 4.4.1; ; 2024-10-30 16:28:56 UTC; windows
